Kuijjer Lab

Recent Posts

  • March 05, 2024

    New publication

    We have a new publication in Nature Computational Science, in which we present SCORPION, a new gene regulatory reconstruction algorithm for single-cell data. SCORPION's development was led by former group member led by Daniel.

  • January 03, 2024

    New publication

    We have a new publication in the Journal of Immunology, where we investigated the transcriptomic response of endothelial cells upon stimulation with tumor necrosis factor (TNF), identifying two response phases, an acute and a later phase. The work was a collaboration with the group of Lynn Butler at The Arctic University of Norway, University of Tromsø and funded with an NCMM Associate Investigator collaborative grant. The...

  • January 01, 2024

    New publication

    We recently published our perspectives on single-sample network modeling in the 20 year anniversary issue of BMC Biology. Check it out here to get an understanding of the strengths and challenges of single-sample network modeling and to learn more the past, present, and future of the field. More information can also be found in the publications section.

  • November 13, 2023

    Funding from the Norwegian Cancer Society

    The Kuijjer group has received funding from the Norwegian Cancer Society through the "Krafttak mot Kreft" program, for the project "Precision network medicine for treatment stratification of metastatic breast cancer." The project concerns computational method development and analyses to better understand the regulatory alterations that may contribute to metastatic breast cancer. We are very excited to start this project in 2024.

  • October 09, 2023

    New publication

    We recently published new work, led by Ping-Han, in Bioinformatics. Ping-Han developed a new normalization method, called SNAIL, which he specifically designed for the pre-processing of large-scale heterogeneous RNA-Seq data prior to network modeling.