Recent Posts

• March 22, 2023

  The Kuijjer group has been renewed

  We are delighted to announce that the group has been renewed for our second term at NCMM, starting on October 1, 2023. Great job everyone! And thanks for all the help and trust from collaborators, mentors, funding agencies, and all others who contributed to making our first four years at NCMM successful. Looking forward to continuing working together!

• March 10, 2023

  New publication

  Marouen Ben Guebila from the Quackenbush group developed NetZoo, multilingual package that includes various tools for network reconstruction and analysis, including PyPanda, PUMA, LIONESS, and SAMBAR, with contributions from former visiting student David van IJzendoorn and former student and Research Assistant Genís Calderer. NetZoo is available on github. The paper includes analyses to demonstrate the value of the integrated toolkit and is now...

• February 20, 2023

  New BioRχiv pre-print

  We have a new BioRχiv pre-print as part of a collaboration with researchers from the Institute of Biotechnology, National Autonomous University of Mexico (UNAM). Here, we used our network tools (PANDA and LIONESS) to investigate the reduced development of colitis in mice upon enrichment of their environment. This indicated a Myc-driven regulatory network is enhanced by colitis and is attenuated by exposure to an enriched environment, via downmodulation...

• January 23, 2023

  New BioRχiv pre-print

  We have posted a new BioRχiv pre-print by Daniel. Daniel developed SCORPION, or Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks, an approach to reconstruct gene regulatory networks based on single cell transcriptomic data.

• January 22, 2023

  OBiWoW2022

  In December, group members participated in organizing and giving workshops at the first ever Oslo Bioinformatics Workshop Week. It was a very successful initiative that brought together students and researchers from different fields, working in and/or interested in bioinformatics. Please see the NCMM news article for more information.