Recent Posts

• March 10, 2023

  New publication

  Marouen Ben Guebila from the Quackenbush group developed NetZoo, multilingual package that includes various tools for network reconstruction and analysis, including PyPanda, PUMA, LIONESS, and SAMBAR, with contributions from former visiting student David van IJzendoorn and former student and Research Assistant Genís Calderer. NetZoo is available on github. The paper includes analyses to demonstrate the value of the integrated toolkit and is now...

• February 20, 2023

  New BioRχiv pre-print

  We have a new BioRχiv pre-print as part of a collaboration with researchers from the Institute of Biotechnology, National Autonomous University of Mexico (UNAM). Here, we used our network tools (PANDA and LIONESS) to investigate the reduced development of colitis in mice upon enrichment of their environment. This indicated a Myc-driven regulatory network is enhanced by colitis and is attenuated by exposure to an enriched environment, via downmodulation...

• January 23, 2023

  New BioRχiv pre-print

  We have posted a new BioRχiv pre-print by Daniel. Daniel developed SCORPION, or Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks, an approach to reconstruct gene regulatory networks based on single cell transcriptomic data.

• January 22, 2023

  OBiWoW2022

  In December, group members participated in organizing and giving workshops at the first ever Oslo Bioinformatics Workshop Week. It was a very successful initiative that brought together students and researchers from different fields, working in and/or interested in bioinformatics. Please see the NCMM news article for more information.

• January 21, 2023

  Multi-omics course

  In December, the group co-organized an international PhD course on multi-omics data analysis and integration for precision medicine (click here for more information about the course). The course included lectures by NCMM group leaders, hands-on workshops, lectures by national and international external speakers who work in multi-omics analysis and data integration, and presentations of recent literature by the students. Please see the NCMM news article to...